| Range |
Figure - link
|
| Organism |
bacteria |
| Reference |
Pinchuk et al., Constraint-based model of Shewanella oneidensis MR-1 metabolism: a tool for data analysis and hypothesis generation. PLoS Comput Biol. 2010 Jun 24 6(6):e1000822. doi: 10.1371/journal.pcbi.1000822. p.3 figure 1BPubMed ID20589080
|
| Primary Source |
See refs beneath figure |
| Method |
"The slope and intercept represent the growth- and nongrowth
rate dependent ATP requirements, GAR and NGAR, respectively.
Panel B shows ATP requirements for various microbes that have been
reported in the literature [primary sources]. The reported GAR values for other
microbes were adjusted to remove ATP used for protein polymerization
(4 ATP/peptide bond) since ATP used for protein synthesis is accounted
for separately in the S. oneidensis MR-1 model and is not part of the MR-
1 GAR value." |
| Comments |
"From the experimental growth and lactate consumption rates,
the model estimated NGAR to be 1.03 mmol ATP/(g AFDW×h),
and GAR to be 220.22 mmol ATP/g AFDW [for Shewanella oneidensis BNID 111303], when the transfer of
electrons from ubiquinol to O2 has a proton translocation
efficiency of 2.8H+
/2e-. This GAR is significantly higher than
values reported for other microorganisms (Figure 1B) [primary sources]." AFDW=ash-free dry weight. Values need to be extracted visually from panel B |
| Entered by |
Uri M |
| ID |
111305 |