Results
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| Property | Organism | Value | Units | ID | Details |
|---|---|---|---|---|---|
| Total amount of LacI repressor | Bacteria Escherichia coli | 0.01 (Table - link) | µM | 100734 | Kalisky T, Dekel E, Alon... |
| Affinity of Allolactose and LacI | Bacteria Escherichia coli | 6 (Table - link) | μM | 100743 | Cost–benefit theory and... |
| Affinity of LacI and the DNA | Bacteria Escherichia coli | 10^-10-10^-11 Table - link | M | 100741 | Cost–benefit theory and... |
| Unbinding time of LacI transcription factor to DNA | Bacteria Escherichia coli | 1-5 | msec | 102007 | Jie Xiao, Johan Elf,... |
| One dimensional diffusion constant of LacI repressor dimer along DNA segments | Bacteria Escherichia coli | 0.046 (±0.01 equivalent to (4.0±0.9)×10^5 bp^2/sec) | µm^2/sec | 102036 | Elf J, Li G, Xie XS.... |
| Number of LacI–Venus molecules expressed and number of expression events per cell cycle | Bacteria Escherichia coli | molecules per expression event 2.2±0.05 expression events per cell cycle 2.5±0.04 | N/A | 112062 | Ullman G, Wallden M,... |
| Parameters of the lactose repressor according to mathematical model | Bacteria Escherichia coli | Table - link | N/A | 106217 | Ceroni F, Furini S, Giordano... |
| Time for one repressor to search for one specific binding site | Bacteria Escherichia coli | <360 | sec | 109957 | Li GW, Xie XS. Central... |
| Replication errors per genome | Bacteria Escherichia coli | 2.5e-3 | Unitless | 102008 | Drake JW, A constant... |
| Diffusion coefficient of Venus YFP in cytoplasm | Bacteria Escherichia coli | 8 (+4/-2) | µm^2/s | 105477 | Elf J, Li G, Xie XS.... |
| Number of Tsr–Venus molecules expressed from the lacY gene & number of expression events per cell cycle | Bacteria Escherichia coli | molecules per expression event 1.5±0.1 expression events per cell cycle 1.7±0.1 | N/A | 112061 | Ullman G, Wallden M,... |
| Concentration of Lac repressor | Bacteria Escherichia coli | 50 | nM | 103602 | Bintu L, Buchler NE,... |
| Lac repressor concentration | Bacteria Escherichia coli | 10 | nM | 102083 | Benno Muller-hill, 1996... |
| Number of transcription factors per cell in E. coli, yeast and human | Various | Table - link | N/A | 106210 | Wunderlich Z, Mirny LA.... |
| Diffusion properties of DNA binding proteins on elongated DNA | Generic | Table - link | N/A | 107460 | DeSantis MC, Li JL, Wang... |
| Apparent diffusion constant of protein along DNA segments | Bacteria Escherichia coli | 0.4 (±0.02) | µm^2/sec | 102038 | Elf J, Li G, Xie XS.... |
| Affinity of external lactose and LacY | Bacteria Escherichia coli | 400 | µM | 100739 | Cost–benefit theory and... |
| Time of three dimensional diffusion of protein through cytoplasm between two DNA segments | Bacteria Escherichia coli | <=0.5 | msec | 102055 | X. Sunney Xie, Paul J. Choi... |
| Time to transcribe an average gene | Mammalian tissue culture cell | 20 | min | 104587 | Darzacq X, Shav-Tal Y... |
| Variables and constants used for modeling the lac operon | Generic | Table - link | N/A | 101421 | Kalisky T., Dekel E.... |