||Vorholt JA. Microbial life in the phyllosphere. Nat Rev Microbiol. 2012 Dec10(12):828-40. doi: 10.1038/nrmicro2910 p.830 left column 2nd paragraphPubMed ID23154261
|| Stark M, Berger SA, Stamatakis A, von Mering C. MLTreeMap accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies. BMC Genomics. 2010 Aug 5 11: 461 DOI: 10.1186/1471-2164-11-461PubMed ID20687950
||Primary source abstract: "Existing algorithms are largely optimized for speed and coverage: in contrast, [investigators] present here a software framework that focuses on a restricted set of informative gene families, using Maximum Likelihood to assign these with the best possible accuracy. This framework ('MLTreeMap', link ) uses raw nucleotide sequences as input, and includes hand-curated, extensible reference information." Please note: as of August 5th 2018 link is broken
||P.830 left column 2nd paragraph: "Fig. 2 shows the results of an MLTreeMap analysis [primary source] from four different phyllosphere samples: the dicotyledons Glycine max (soybean), Trifolium repens (white clover) and Arabidopsis thaliana, and the monocotyledon Oryza sativa (rice) [refs 12,19]. Proteobacteria was the most represented phylum, with members of the class Alphaproteobacteria constituting up to ∼70% of the community in each of the four phyllosphere samples."