Results
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Property | Organism | Value | Units | ID | Details |
---|---|---|---|---|---|
Summary of the thermodynamic and kinetic parameters of 12 proteins, calculated from simulations of reversible folding | Unspecified | Table - link | N/A | 112295 | Lindorff-Larsen K, Piana S... |
Protein translaton rate | Various | eukaryotes ~4: bacteria ~20 | amino acids/sec | 113348 | Kim YE, Hipp MS, Bracher A... |
Time interval over which cerebral cortex folding largely occurs | Mammals | in ferrets postnatal day (P)10 to P30: in rhesus macaques gestation days (G)90 to G135: in humans from the 25th week of gestation to a postnatal age of 4 months Table - link | N/A | 117215 | Kroenke CD, Bayly PV.... |
Kinetic and thermodynamic parameters for the folding of small, monomeric proteins that fold with two-state kinetics | Various | Table - link | N/A | 114414 | Jackson SE. How do small... |
Length of complete protein domain | Unspecified | ~50 - 300 | amino acid residues | 113347 | Kim YE, Hipp MS, Bracher A... |
Residence time of TF (trigger factor) protein on ribosome | Bacteria Escherichia coli | ~10 | sec | 113351 | Kim YE, Hipp MS, Bracher A... |
Fraction of protein sequences that consist of more than one domain | Bacteria Mycoplasma genitalium | ~67 | % | 116986 | Apic G, Gough J, Teichmann... |
Average protein size | Various | E. coli ~35: human ~52 | kDa | 113349 | Kim YE, Hipp MS, Bracher A... |
Amino acid composition of protein-protein interfaces | Unspecified | Table - link | N/A | 107915 | Lo Conte L, Chothia C... |
Polar interactions at protein-protein interfaces | Unspecified | Table - link | N/A | 107916 | Lo Conte L, Chothia C... |
Summary of in vitro chaperone reactions with attempts to correlate folding with ATP-costs | Bacteria Escherichia coli | Table - link | N/A | 113283 | Sharma SK, De los Rios P... |
Fraction of the endogenous proteome that requires additional assistance in folding from the multisubunit chaperonin GroEL | Bacteria Escherichia coli | 10 | % | 106325 | Scotto-Lavino E, Bai M... |
Time for transition between protein activation/inactivation states | Bacteria Thermotoga maritima | 100-200 | µsec | 104596 | Chung HS, Louis JM, Eaton... |
Average protein length | Bacteria Escherichia coli | ~325 | Amino acids | 108986 | Dill KA, Ghosh K, Schmit... |
Number of distinct protein types in cardiac mitochondria | Rat Rattus norvegicus | 940 | Unitless | 103109 | Zhang J, Li X, Mueller M... |
Protein concentration in cellular environment | Eukaryotes | 50 to 200 | mg/ml | 109382 | Finka A, Goloubinoff... |
Protein-protein complexes | Unspecified | Table - link | N/A | 107913 | Lo Conte L, Chothia C... |
Maturation time of enhanced green fluorescent protein (EGFP) | Bacteria Escherichia coli | ~60 Table - link | Min | 107001 | Iizuka R, Yamagishi-Shirasaki... |
Number of domains a protein typically folds into as dependent on size | Generic | 10 to 30 kDa a single domain: Peptides larger than 50 kDa two or more domains | domains | 110566 | Erickson HP. Size and... |
Energy for transferring a hydrophobic side chain (in a protein) from water into oil-like media | Unspecified | 1 – 2 | kcal/mol | 114428 | Dill KA, Ozkan SB, Shell MS... |