CO2-concentrating mechanism (CCM) model
|
Prochlorococcus |
Table - link |
N/A |
111981 |
Hopkinson BM, Young JN... |
Typical stromal HCO3– concentration apparently required for CCM (CO2 concentrating mechanism) function
|
Green algae Chlamydomonas reinhardtii |
2 – 3 |
mM |
114619 |
Wang Y, Stessman DJ,... |
Number of ATP required for each CO2 molecule assimilated in CCM
|
Cyanobacteria |
1-2 |
molecules |
102630 |
Fridlyand L, Kaplan A... |
Number of quanta expended for assimilation of each CO2 molecule in CCM
|
Green algae |
3-4 |
Unitless |
102631 |
Fridlyand L, Kaplan A... |
Ratio between CO2 concentration in cell and CO2 external abundance due to CCM
|
Cyanobacteria |
1000 |
Fold |
106094 |
Peña KL, Castel SE, de... |
Time for full photosynthetic acclimation of the CCM [Carbon concentrating mechanism] to low CO2 conditions
|
Chlamydomonas reinhardtii |
2 hours - 5 |
hours |
116801 |
Peter Vance and Martin... |
Internal HCO3– concentration characteristic of the typical cyanobacterial system
|
Cyanobacteria |
20 – 40 |
mM |
114620 |
Wang Y, Stessman DJ,... |
Diagram of the chloroplast pump model with representative Ci (inorganic carbon) concentrations
|
Diatom Phaeodactylum tricornutum |
Table - link |
N/A |
116865 |
Hopkinson, B.M., 2014.... |
Accumulation of inorganic carbon (Ci) within cell that enables high rates of photosynthesis (even) at low extracellular Ci concentrations
|
Microalgae |
2 to 6 |
fold that of extracellular concentrations |
116864 |
Hopkinson, B.M., 2014.... |
Reconstructed sugar utilization pathways and newly assigned genes in Shewanella spp.
|
Bacteria Shewanella spp. |
Table - link |
N/A |
107281 |
Rodionov DA et al., Genomic... |
Apparent Km for CO2 conversion by rubisco
|
Cyanobacteria |
250 |
µM |
102629 |
Fridlyand L, Kaplan A... |
Maximum rate of CO2 fixation per cell
|
Cyanobacteria Anabaena |
8E-12 |
µmol/sec |
102628 |
Fridlyand L, Kaplan A... |
Carbon dioxide concentration in most natural aquatic environments
|
Biosphere |
<15 |
μM |
109895 |
Price GD, Badger MR,... |
Ratio between permeability of (uncharged) CO2 and HCO3- to lipid membranes
|
Unspecified |
~1,000 |
Fold |
109898 |
Price GD, Badger MR,... |
CO2 and HCO3- transport in cytoplasm and chloroplast
|
Diatoms |
Table - link |
N/A |
116875 |
Hopkinson BM, Dupont CL... |
Kinetic parameters of enzymes in central carbon metabolism
|
Bacteria Escherichia coli |
Table - link |
N/A |
109681 |
Peskov K, Mogilevskaya E... |
Carboxysome diameter
|
Cyanobacteria |
90 – 250 |
nm |
109899 |
Price GD, Badger MR,... |
Contribution of Synechococcus and Prochlorococcus genera to primary production in oligotrophic oceans located between 40°N and 40°S
|
Cyanobacteria |
30 – 80 |
% |
109896 |
Price GD, Badger MR,... |
Peak internal Ci (inorganic carbon) pools
|
Cyanobacteria |
20 – 40 |
mM |
109897 |
Price GD, Badger MR,... |
Number of carboxysomes in cell under log cell growth
|
Cyanobacteria Synechococcus elongatus PCC 7942 |
3.7 (±1.2) |
Carboxysomes/cell |
105890 |
Savage DF, Afonso B, Chen AH... |