Genomic data (for type strain ATCC6919, see Comments section for data on antibiotic-resistant strain HL411PA1)

Range genome size 2,602,215bp: G+C content 60.1%: predicted open reading frames (ORFs) 2,620
Organism Bacteria Propionibacterium acnes
Reference Liu J et al., Draft Genome Sequences of Propionibacterium acnes Type Strain ATCC6919 and Antibiotic-Resistant Strain HL411PA1. Genome Announc. 2014 Aug 14 2(4). pii: e00740-14. doi: 10.1128/genomeA.00740-14. p.1 left column 3rd paragraphPubMed ID25125638
Method P.1 left column 3rd paragraph: "The genomes of ATCC6919 and HL411PA1 were sequenced using Illumina MiSeq. The sequence reads were pair-ended with 250 nucleotides per read. Both genomes were assembled using MIRA v3.2.1 (ref 7) with manual inspections using Consed (ref 8). Gene annotation was performed using GeneMark HMM (ref 9) and Glimmer 3.02 (ref 10). Transfer RNAs (tRNAs) and transfer messenger RNAs (tmRNAs) were predicted using Aragorn (ref 11)."
Comments P.1 left column 3rd paragraph: "The ATCC6919 genome is 2,602,215 bp long (260 contigs, N50 of 50,832) with 60.1% G+C content and 2,620 predicted open reading frames (ORFs). The sequencing coverage is 72×. The HL411PA1 genome is 2,497,951 bp long (55 contigs, N50 of 174,713) with 60.0% G+C content and 2,369 predicted ORFs. The sequencing coverage is 118×."
Entered by Uri M
ID 112980