Growth rate independent transcription parameters
| Range | Table - link |
|---|---|
| Organism | Bacteria Escherichia coli |
| Reference | Klumpp S, Hwa T. Growth-rate-dependent partitioning of RNA polymerases in bacteria. Proc Natl Acad Sci U S A. 2008 Dec 23 105(51):20245-50. doi: 10.1073/pnas.0804953105. supporting information Table S2PubMed ID19073937 |
| Primary Source | [5] Bremer H, Dennis PP (1996) Modulation of chemical composition and other parameters of the cell by growth rate. Escherichia coli and Salmonella, ed Neidhardt FC (ASM Press, Washington, DC), 2nd Ed, pp 1553–1569 [6] Churchward G, Estiva E, Bremer H (1981) Growth Rate-dependent control of chromosome replication initiation in Escherichia Coli. J Bacteriol 145: 1232–1238 [9] Keseler IM, et al. (2005) EcoCyc: A comprehensive database resource for Escherichia coli. Nucleic Acids Res 33 :D334–D337.PubMed ID7009573, 15608210 |
| Comments | Supporting information p.1 right column bottom paragraph: "All parameter values used in the calculations for balanced exponential growth are summarized in Table S1 (BNID 110068) and Table S2. Most of these parameter values were taken from tables 3 and 4 of the review by Bremer and Dennis (primary source 5). Parameters not given there were estimated in the following way: Numbers of RNAPs transcribing mRNA and rRNA were determined by using Eq. 2. The cell volume was calculated from the cell mass by using the cell mass and volume measurements of (primary source 6)." |
| Entered by | Uri M |
| ID | 110069 |