| Value |
3767
unitless
Range: Table - link unitless
|
| Organism |
Bacteria Caulobacter crescentus |
| Reference |
Nierman et al., Complete genome sequence of Caulobacter crescentus. Proc Natl Acad Sci U S A. 2001 Mar 27 98(7):4136-41 p. 4138 table 1 & left column 2nd paragraphPubMed ID11259647
|
| Method |
"ORFs were identified by
using GLIMMER (6). Annotation of the identified ORFs was accomplished
by manual curation of the outputs of a variety of
similarity searches. Searches of the predicted coding regions were
performed with BLASTP, as previously described (7). The protein–
protein matches are aligned with blastoextendorepraze, a modified
Smith–Waterman (8) algorithm that maximally extends regions of
similarity across frameshifts. Gene identification is facilitated by
searching against a database of nonredundant bacterial proteins
(nraa) developed at TIGR and curated from the public archives
GenBank, Genpept, PIR, and SwissProt. Searches matching entries
in nraa have the corresponding role, gene common name, percent
identity and similarity of match, pairwise sequence alignment, and
taxonomy associated with the match assigned to the predicted coding region and stored in the database." "The genome sequence of C. crescentus CB15 was determined by the whole genome random sequencing method (Heidelberg et al., 2000 PMID 10952301)." (Numbers in brackets point to refs in article). |
| Comments |
"A total of 3,767 predicted ORFs were identified, of which 2,030
(53.9%) are assigned putative functions, 725 (19.2%) have matches
to hypothetical proteins, and 1,012 (26.9%) have no database match
(Fig. 4, published as supplemental data on the PNAS web site, www.pnas.org). Coding regions comprise 90.6% of the chromosome. Approximately 1/2 of the proteins (1,801) are members of 678 paralogous families." |
| Entered by |
Uri M |
| ID |
105498 |