Results
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| Property | Organism | Value | Units | ID | Details |
|---|---|---|---|---|---|
| Fraction of cytosines in DNA that are globally methylated | Thale cress Arabidopsis thaliana | ~10.5 | % of all cytosines | 113094 | Vidalis A, Živković D... |
| GC content | Mycobacterium tuberculosis | 65.6 | % | 101990 | Cole, ST et al. Deciphering... |
| Average molecular mass of RNA nucleotide in E. coli | Bacteria Escherichia coli | 324.3 (Table - link) | Da | 104886 | Nierlich DP. Regulation... |
| Number of depyrimidination events | Mammalian tissue culture cell | 500 | bases depyrimidinated per cell per day | 100446 | R. Weinberg, The Biology... |
| Number of depurination events | Mammalian tissue culture cell | 10000 | bases depurinated per cell per day | 100444 | R. Weinberg, The Biology... |
| Number of ATP molecules that may be required for repair of a single double-strand break (used in signaling, the generation of repair foci, and the formation of the RAD51 nucleofilament) | Unspecified | >10^4 | ATP molecules | 112972 | Hoeijmakers JH. DNA damage... |
| Range of Genome-wide Methylation Levels (GMLs-a measure of the percentage of all cytosines that are methylated) | Plants | Theobroma cacao 5%-Beta vulgaris 43%: mean ~16% | % | 113095 | Vidalis A, Živković D... |
| Molecular mass of DNA bases (nucleotides) | Generic | A 313.2: C 289.2: G 329.2: T 304.2 | Dalton | 100304 | Muddiman DC, Anderson GA... |
| Stacking and base pairing contributions to DNA polymer stability under different ambient conditions | Generic | Table - link | N/A | 111667 | Yakovchuk P, Protozanova E... |
| Strength of hydrogen bond from HO-H to H3O+ | Generic | 18.3 (Table - link) | KJ/mole | 103913 | Markovitch O, Agmon N.... |
| Heuristic definition of Body methylated (BM) genes | Eukaryotes | genes that methylate >90% of their CG sites and <5% of their CHG and CHH sites | unitless | 113097 | Vidalis A, Živković D... |
| Accuracy of DNA synthesis and apparent accuracy of DNA methylation | Various | DNA synthesis 1 ‘unforced’ error for every 10^7–10^8 bases copied: DNA methylation ~96% | N/A | 112981 | Bird A. Perceptions of... |
| Typical range of kcat/Km (rate constants) for reactions between H2O2 (hydrogen peroxide) and the dehydratases and mononuclear enzymes and half-time for enzyme inactivation by H2O2 | Bacteria Escherichia coli | kcat/Km 10^3 to 10^4M^−1×s^−1: half-time for enzyme inactivation 20min | N/A | 112945 | Imlay JA. The molecular... |
| Rate of production of single-strand breaks (SSBs) and apurinic/apyrimidinic (AP) sites and oxidation products 8-oxoguanine (8-oxoG) and thymine glycol (TG) in DNA | Unspecified | SSBs and AP sites in vivo ≈600 per h: 8-oxoG ≥≈200/cell/hour: TG ≥100/cell/hour | N/A | 112979 | Vilenchik MM, Knudson... |
| Rule of thumb for nucleotide concentration | Mouse Mus musculus | 0.078 | g/g DW | 106065 | Sheikh K, Förster J,... |
| Volumes of RNA bases and amino acids | Generic | Table - link | N/A | 102522 | Neil R. Voss. 2006 'Geometric... |
| Properties of several sequenced genomes | Eukaryotes | Table - link | N/A | 107597 | Merchant et al., The... |
| pKa of erythrocyte metabolites | Various | Table - link | N/A | 101764 | Dawson, R. M. C., D.... |
| Average concentrations of purines and pyrimidines | Various | Table - link | μM | 106639 | Traut TW. Physiological... |
| GC content of eukaryotes | Eukaryotes | Table - link | % | 102523 | Zhou Y, Bizzaro JW, Marx... |