Results
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| Property | Organism | Value | Units | ID | Details |
|---|---|---|---|---|---|
| Physiological concentration of Pi in the cytoplasm | Unspecified | ~10 | mM | 100772 | Bioenergetics 3, Nicholls... |
| Diffusion coefficient of Venus YFP in cytoplasm | Bacteria Escherichia coli | 8 (+4/-2) | µm^2/s | 105477 | Elf J, Li G, Xie XS.... |
| Typical diffusion coefficient of protein in cytoplasm | bacteria | 1 - 10 | µm^2/sec | 112087 | Wingreen NS, Huang KC.... |
| Diameter of microfilaments in most apical cytoplasm | Fruit fly Drosophila melanogaster | 60 - 70 | Å | 112072 | Reinhardt CA, Bryant... |
| Diffusion coefficient of dextran (40kDa) in Drosophila cytoplasm | Fruit fly Drosophila melanogaster | 17.6 (±1.8) | µm^2/s | 100198 | Gregor T, Bialek W, de... |
| Decrease in diffusion coefficient in cytoplasm compared to dilute solution | Bacteria Escherichia coli | 10 to 30 | Fold | 106193 | Pielak GJ, Li C, Miklos AC... |
| GFP diffusion rate in cytoplasm of BL21(DE3) strain | Bacteria Escherichia coli | 6.1 (±2.4 Table - link) | µm^2/s | 105898 | Konopka MC, Shkel IA... |
| Percentage of oat coleoptile cells volume occupied by cytoplasm | Oat Avena sativa | 3.5 | % | 107828 | Owens T, Poole RJ. Regulation... |
| CO2 and HCO3- transport in cytoplasm and chloroplast | Diatoms | Table - link | N/A | 116875 | Hopkinson BM, Dupont CL... |
| Maximal size of molecule that can freely diffuse in cytoplasm | Eukaryotes | 500 | KDa | 106161 | Sodeik B. Mechanisms... |
| Decrease in diffusion coefficient in cytoplasm compared to dilute solution | Vertebrates | 1.5 to 3.8 | Fold | 106192 | Pielak GJ, Li C, Miklos AC... |
| Fraction of labeled heterogeneous nuclear RNA (hnRNA) that enters the cytoplasm | Mammals | mouse L cell 2.1%: rabbit erythroid cell 3.5% (of which globin transcripts represent ≥85%) | % | 111162 | Jackson DA, Pombo A,... |
| Export time of mRNA from nucleus to cytoplasm | Mammalian tissue culture cell | 10-30 | min | 105622 | Ben-Tabou de-Leon S,... |
| D in cytoplasm relative to that in water (D/Do) of FITC-dextran in nucleus | Mammalian tissue culture cell | 0.25±0.02 MDCK: 0.27±0.03 Swiss 3T3 fibroblasts | unitless | 108253 | Seksek O, Biwersi J,... |
| Diffusion coefficients of metabolites in model solution, cytoplasm, and mitochondria | Various | Table - link | N/A | 104641 | García-Pérez AI, Lóp... |
| Time for recovery of half of the GFP after photobleaching in cell cytoplasm | Chinese hamster ovary (CHO) | 83 (±6) | ms | 102557 | Swaminathan R, Hoang CP... |
| Diffusion coefficient of 62kDa dextran through hepatocyte cytoplasm | Rat Rattus norvegicus | 2 | µm^2/sec | 104256 | Peters R. Nucleo-cytoplasmic... |
| Average number density of RNAP within the cytoplasm | Bacteria Escherichia coli | 2200 (1,800 to 3,500) | RNAP/μm^3 | 108605 | Bakshi S, Siryaporn A... |
| Ratio between GFP diffusion rate in cytoplasm of DH5α strain and in water | Bacteria Escherichia coli | 0.09 | Unitless | 105896 | Elowitz MB, Surette MG... |
| Physiological ratio of concentrations of ATP to ADP in the cytoplasm | Unspecified | ~1000 | unitless | 100773 | Bioenergetics 3, Nicholls... |