Results
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| Property | Organism | Value | Units | ID | Details |
|---|---|---|---|---|---|
| Nucleotide misincorporation rate in transcription | Bacteria Escherichia coli | 1e-4 | mismatch/nucleotide | 103453 | Hani S. Zaher and Rachel... |
| Transcription initiation rate during G1 | Budding yeast Saccharomyces cerevisiae | 0.16±0.07 PP7- MDN1 transncript: 0.24±0.1 MDN1-PP7 transcript | Min^-1 | 106354 | Larson DR, Zenklusen D... |
| Diffusion rate of transcription factor | Unspecified | 1D diffusion rate (along DNA) ~0.05: 3D diffusion rate (cytoplasmic) ~3 | μm^2/sec | 109954 | Li GW, Xie XS. Central... |
| Growth rate dependent transcription parameters | Bacteria Escherichia coli | Table - link | N/A | 110068 | Klumpp S, Hwa T. Gro... |
| Growth rate independent transcription parameters | Bacteria Escherichia coli | Table - link | N/A | 110069 | Klumpp S, Hwa T. Gro... |
| Whole dataset of the nascent transcription rate | Budding yeast Saccharomyces cerevisiae | Table - link | N/A | 106764 | Pelechano V, Chávez S... |
| Transcription rate of 90% of the genes | Budding yeast Saccharomyces cerevisiae | 2.33 and 29.7 | mRNA molecules/hour | 106767 | Pelechano V, Chávez S... |
| Maximum RNA polymerase II transcription elongation rate | Mammalian tissue culture cell | 71.6 | nucleotides/sec | 100662 | Darzacq X, Shav-Tal Y... |
| Affinity of transcription factors for nonspecific DNA | Generic | 10^(-3)-10^(-6) | M | 100610 | G Kolesov, Z Wunderlich... |
| Transcription error rate of endosymbiotic bacteria (corrected value) | Carsonella ruddii | 5.09E-05 | per nucleotide | 113574 | Traverse CC, Ochman H.... |
| Median transcription speed in five cell lines | Human Homo sapiens | HF1, CS-B, and K562 ~1.25 kb/min: TM and MCF-7 ~1.75 kb/min | kb/min | 111271 | Veloso A. et al., Rate... |
| Number of ER transcription factor molecules per cell | Human Homo sapiens | 11,000 ZR-75-1 breast cancer cell line: 260,000 MCF-7 breast carcinoma cell line | Molecules/cell | 106904 | Mark D. Biggin, Animal... |
| Fraction of transcription in HeLa cell | Human Homo sapiens | nucleolar RNA ~20%: nucleoplasmic RNA 80% | % | 111163 | Jackson DA, Pombo A,... |
| Concentration of some transcription factors in animals | Unspecified | 4000 | molecules/cell | 110231 | Li et al. (2014), System... |
| Number of STAT6 transcription factor molecules per cell | Human Homo sapiens | 10,000 CD19+ primary B cells: 200,000 B cell lymphoma cell line | Molecules/cell | 106914 | Mark D. Biggin, Animal... |
| Force generated by RNAP during transcription | Bacteria Escherichia coli | ≤25 | pN | 111872 | Malinen AM et al., Active... |
| Number of p53 transcription factor molecules per cell | Human Homo sapiens | 21,000 LB19 B-lymphoblastoid cell line: 160,000 MCF-7 breast carcinoma cell line | Molecules/cell | 106910 | Mark D. Biggin, Animal... |
| Number of AR transcription factor molecules per cell | Rat Rattus norvegicus | 23000 (Table - link) | Molecules/cell | 106894 | Mark D. Biggin, Animal... |
| Average RNA polymerase II transcription elongation rate | Mammalian tissue culture cell | 6.3 | nucleotides/sec | 100661 | Darzacq X, Shav-Tal Y... |
| Increase in gene expression for each 1,000 nucleotides of transcription distance | Bacteria Escherichia coli | 40 | % | 107513 | Lim HN, Lee Y, Hussein... |