Results
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| Property | Organism | Value | Units | ID | Details |
|---|---|---|---|---|---|
| Numbers of nuclear and cytoplasmic mRNAs per cell in MIN6 cells and liver cells | Mouse Mus musculus | Excel Table - link | mRNAs/cell | 112415 | Bahar Halpern K et al.... |
| Average ratio between numbers of cytoplasmic and nuclear mRNAs per cell in MIN6 cells | Mouse Mus musculus | 3.8 (±0.05) | unitless | 112416 | Bahar Halpern K et al.... |
| Measured total protein concentration in rosette | Thale cress Arabidopsis thaliana | 15 | mg/gram FW rosette | 107787 | Piques et al., Ribosome... |
| ATP requirement for the addition of an amino acid to a growing peptide chain | Generic | ~5 | ATP/amino acid | 107782 | Piques et al., Ribosome... |
| Rate of ribosome progression in eukaryotic cell | Eukaryotes | 1 to 8 | amino acids/sec/translating ribosome | 107783 | Piques et al., Ribosome... |
| Typical values of rate of ribosome progression in animal cells at 25°-26°C | Metazoa animals | 4 to 5 | amino acids/sec/translating ribosome | 107784 | Piques et al., Ribosome... |
| Average molecular weight of an amino acid | Generic | 118.9 | g/mol | 107786 | Piques et al., Ribosome... |
| Decrease of observed ribosome density compared to maximum theoretical packing | Unspecified | ~3 | Fold lower | 107778 | Piques et al., Ribosome... |
| Number of codons physically occupied by a ribosome | Eukaryotes | ~12 | Codons | 107779 | Piques et al., Ribosome... |
| Maximum packing of ribosomes on polysome is lower than the maximal packing density by | Unspecified | 4 to 6 | Fold | 107780 | Piques et al., Ribosome... |
| Half life of RuBisCO in mature leaves | Corn Zea mays | ~7 | days | 107781 | Piques et al., Ribosome... |
| mRNA lifetime | Bacteria Escherichia coli | this investigation's measurement 2.5min: previous measurement ~8min | min | 112326 | Chen H, Shiroguchi K... |
| Median mRNA half-life | Mammals | this study in human K562 cells ~50min: previous study in mice immune dendritic cells (DCs) ~139min | min | 112681 | Schwalb B et al., TT-seq... |
| Expressed genes and transcripts in developing mouse tissues and cultured stem cells | Mouse Mus musculus | 400,000-851,000 Table - link | mRNAs/cell | 113016 | Carter MG et al., Transcript... |
| Transcription initiation rate during G1 | Budding yeast Saccharomyces cerevisiae | 0.16±0.07 PP7- MDN1 transncript: 0.24±0.1 MDN1-PP7 transcript | Min^-1 | 106354 | Larson DR, Zenklusen D... |
| Beta-galactosidase tetramers per uninduced cell | Bacteria Escherichia coli | 1 | unitless | 102018 | X. Sunney Xie, Paul J. Choi... |
| Average mRNA half-life | Bacteria Escherichia coli | 1 | min | 111998 | Pai A, You L: Optimal... |
| Fraction of mRNA by mass | Bacteria Escherichia coli | 4 | % | 111921 | Moran MA et al., Sizing... |
| Average lengths of mRNA UTR (UnTranslated Region) | Eukaryotes | 5′ UTR ~150bp: 3′ UTR ~350 | bp | 112128 | Michael Lynch and Georgi... |
| Diffusion coefficient of nuclear mRNAs in oocyte | Fruit fly Drosophila melanogaster | corralled diffusion 0.02µm^2/sec: random diffusion 0.09µm^2/sec | µm^2/sec | 112164 | Halstead JM et al., An... |