Results
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Property | Organism | Value | Units | ID | Details |
---|---|---|---|---|---|
Kinetic parameters of enzymes in central carbon metabolism | Bacteria Escherichia coli | Table - link | N/A | 109681 | Peskov K, Mogilevskaya E... |
ATP yield per substrate in fermentation | Bacteria Escherichia coli | 3 | ATP/sugar | 103350 | Byung Hong Kim, Geoffrey... |
Fraction of fructose 1,6-bisphosphate that is channelled to CO2 | Bacteria Escherichia coli | 99 (±16) | % | 110834 | Shearer G, Lee JC, Koo JA... |
Standard Gibbs free energy of glycolytic reactions at various pH and ionic strengths | Generic | Table - link | kJ/mol | 112696 | Park JO et al., Metabolite... |
Concentration ranges (mM) used in the Thermodynamic Feasibility Analysis (TFA) | Unspecified | Table - link | N/A | 106542 | Vojinovic V, von Stockar... |
Number of ATP produced in oxidative phosphorylation | Generic | on average 2.5 ATPs per NADH oxidation and 1.5 ATP per FADH2 oxidation | N/A | 110682 | Fan J, Kamphorst JJ, Mathew R... |
Concentration of ATP in cytosol and mitochondria after exposure to light | Spinach Spinacia oleracea | 2.55 (±0.4) | mM | 103311 | Heineke D, Riens B, Grosse H... |
Number of ATPs produced per glucose molecule in a combination of respiration and fermentation in fibroblast | Human Homo sapiens | ≈16 | ATP/glucose | 111475 | Flamholz A, Phillips R... |
Rate of ATP production in fibroblast (assuming ≈20 ATPs produced per glucose in a combination of respiration & fermentation) | Human Homo sapiens | ≈1E+9 | ATP/cell/sec | 111476 | Flamholz A, Phillips R... |
Fraction of reducing power, of the total NADH/FADH2 production in iBMK cell | Mammalian tissue culture cell | oxidation of glutamine 60, oxidation of glucose 30, oxidation of acetyl-CoA 10 | % | 110685 | Fan J, Kamphorst JJ, Mathew R... |
Standard Gibbs free energy of reaction and standard error based on component contribution method | Generic | Table - link | kJ/mol | 112697 | Park JO et al., Metabolite... |
PPi pool in plant tissue cytoplasm | Plants | 0.04 to 0.8 | mM | 108168 | Shi-Jean S. Sung, Dian-Peng... |
ATP/ADP ratio in cytosol after exposure to light | Spinach Spinacia oleracea | 4.8 | Unitless | 103317 | Heineke D, Riens B, Grosse H... |
ATP/ADP ratio in mitochondria after exposure to light | Spinach Spinacia oleracea | 1.9 | Unitless | 103318 | Heineke D, Riens B, Grosse H... |
Change in Gibbs free energy in hydrolysis of Acetyl CoA | Unspecified | -35.7 (Table - link) | kJ/mol | 104430 | Thauer RK, Jungermann K... |
Change in Gibbs free energy in hydrolysis of Succynil CoA | Unspecified | -44.8 (Table - link) | kJ/mol | 104431 | Thauer RK, Jungermann K... |
Primary metabolites and their response to changing O2 supply in seeds | Soybean Glycine max | Table - link | N/A | 108725 | Rolletschek H, Radchuk R... |
Half life of Phosphoglycerate kinase 1 (PGK1) mRNA | Budding yeast Saccharomyces cerevisiae | 70 (53-98) | min | 105508 | Wang Y, Liu CL, Storey JD... |
Cellular concentration of glyceraldehyde-3-phosphate dehydrogenase and phosphoglycerate kinase | Unspecified | ~0.1 | µM | 111414 | Bar-Even A. et al., The... |
kcat of reactions associated with: | Unspecified | Central-CE (carbohydrate energy) metabolism 79 s^-1: secondary metabolism 2.5s^-1 | sec^-1 | 111415 | Bar-Even A. et al., The... |