Results
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Property | Organism | Value | Units | ID | Details |
---|---|---|---|---|---|
Transcription and translation accuracy | Bacteria Escherichia coli | Transcription 1:60,000 - 1:120,000 wrong/correct nucleotides: translation ≥1:3,000 wrong/correct aa | N/A | 111267 | Ulrich Stelzl, Sean Connell... |
Typical transcription initiation rate | Bacteria Escherichia coli | 20 | 1/min/gene | 111997 | Pai A, You L: Optimal... |
RNAP speed of transcription | Bacteria Escherichia coli | 20 – 90 | nts/sec | 111871 | Malinen AM et al., Active... |
Transcription and translation rates of individual genes | Bacteria Escherichia coli | Table - link | N/A | 108490 | Proshkin S, Rahmouni AR... |
RNA polymerase II transcription rate | Various | 18-72 | nucleotides/second | 101973 | Intron Delays and Tr... |
Typical speed of ribosomal RNA transcription | Bacteria Escherichia coli | ~70 | nts/sec | 112327 | Chen H, Shiroguchi K... |
Transcription error rate (corrected values) | Bacteria Buchnera aphidicola | mRNA 4.67±1.53×10^−5: rRNA 3.28±0.56×10^−5 | per nucleotide | 113573 | Traverse CC, Ochman H.... |
Predicted number of transcription factors | Bacteria Bacillus subtilis | 249 (Table - link) | Unitless | 105089 | Madan Babu M, Teichmann SA... |
Transcription rate in kidney cell | Rat Rattus norvegicus | 1.1 - 1.4 | kbp/min | 111157 | Jackson DA, Pombo A,... |
Number of transcription units that contain more than 1 ORF (are polycistronic) | Bacteria Escherichia coli | 1652 | Transcription units | 107772 | Cho BK et al., The t... |
RNA Pol II transcription speed | Various | yeast 18-42 unspecified 100 | bases/sec | 111604 | Landenmark HK, Forgan DH... |
Base substitution transcription error rate | Nematode Caenorhabditis elegans | ~4e-6 | misincorporations/site | 110503 | Gout JF, Thomas WK, Smith Z... |
Transcription elongation rate with chloramphenicol | Bacteria Escherichia coli | 27 (Table - link) | nts/sec | 108489 | Proshkin S, Rahmouni AR... |
Fraction of transcription errors that cause an amino acid substitution | bacteria | E. coli 68±1.46%: Buchnera aphidicola 80% | % | 113575 | Traverse CC, Ochman H.... |
Transcription elongation rate of rRNA operons | Bacteria Escherichia coli | 42 (±2) | nucleotides/sec | 101904 | Gotta SL, Miller OL Jr... |
Plant Empirical Transcription Rate (PETR) distribution | Thale cress Arabidopsis thaliana | 38.47 ((in the ln space μ=3.65, sigma=1.13)) | transcripts/hour/cell | 117324 | Uriel Urquiza-García... |
Transcription error rate over all conditions (corrected value) | Bacteria Escherichia coli | 8.23E-05 (±0.55×10^-5) | per nucleotide | 113572 | Traverse CC, Ochman H.... |
Transcription factor content in the genome | bacteria | 4.39 (Table - link) | % | 109280 | Charoensawan V, Wilson D... |
Transcription elongation rate in CH184 strain | Bacteria Escherichia coli | 19 (Table - link) | nts/sec | 108491 | Proshkin S, Rahmouni AR... |
Transcription elongation rate at 37˚C | Bacteria Escherichia coli | 42 (Table - link) | nts/sec | 108488 | Proshkin S, Rahmouni AR... |