The accuracy of reverse transcriptase from HIV-1

Science. 1988 Nov 25;242(4882):1171-3. doi: 10.1126/science.2460925.

Abstract

A study was conducted to determine the fidelity of DNA synthesis catalyzed in vitro by the reverse transcriptase from a human immunodeficiency virus type 1 (HIV-1). Like other retroviral reverse transcriptases, the HIV-1 enzyme does not correct errors by exonucleolytic proofreading. Measurements with M13mp2-based fidelity assays indicated that the HIV-1 enzyme, isolated either from virus particles or from Escherichia coli cells infected with a plasmid expressing the cloned gene, was exceptionally inaccurate, having an average error rate per detectable nucleotide incorporated of 1/1700. It was, in fact, the least accurate reverse transcriptase described to date, one-tenth as accurate as the polymerases isolated from avian myeloblastosis or murine leukemia viruses, which have average error rates of approximately 1/17,000 and approximately 1/30,000, respectively. DNA sequence analyses of mutations generated by HIV-1 polymerase showed that base substitution, addition, and deletion errors were all produced. Certain template positions were mutational hotspots where the error rate could be as high as 1 per 70 polymerized nucleotides. The data are consistent with the notion that the exceptional diversity of the HIV-1 genome results from error-prone reverse transcription.

Publication types

  • Comparative Study
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Avian Myeloblastosis Virus / enzymology
  • DNA / biosynthesis*
  • DNA-Directed DNA Polymerase / metabolism
  • Electrophoresis, Polyacrylamide Gel
  • Escherichia coli / enzymology
  • Exonucleases / metabolism
  • HIV / enzymology*
  • Moloney murine leukemia virus / enzymology
  • Mutation
  • Nucleotides / metabolism
  • RNA-Directed DNA Polymerase / genetics
  • RNA-Directed DNA Polymerase / metabolism*
  • Recombinant Proteins / metabolism

Substances

  • Nucleotides
  • Recombinant Proteins
  • DNA
  • RNA-Directed DNA Polymerase
  • DNA-Directed DNA Polymerase
  • Exonucleases