(19) F NMR spectroscopy as a probe of cytoplasmic viscosity and weak protein interactions in living cells

Chemistry. 2013 Sep 16;19(38):12705-10. doi: 10.1002/chem.201301657. Epub 2013 Aug 6.

Abstract

Protein mobility in living cells is vital for cell function. Both cytosolic viscosity and weak protein-protein interactions affect mobility, but examining viscosity and weak interaction effects is challenging. Herein, we demonstrate the use of (19) F NMR spectroscopy to measure cytoplasmic viscosity and to characterize nonspecific protein-protein interactions in living Escherichia coli cells. The origins of resonance broadening in Escherichia coli cells were also investigated. We found that sample inhomogeneity has a negligible effect on resonance broadening, the cytoplasmic viscosity is only about 2-3 times that of water, and ubiquitous transient weak protein-protein interactions in the cytosol play a significant role in governing the detection of proteins by using in-cell NMR spectroscopy.

Keywords: NMR spectroscopy; cytoplasmic viscosity; fluorine; transient weak interactions.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Escherichia coli / metabolism*
  • Escherichia coli Proteins / chemistry
  • Escherichia coli Proteins / metabolism
  • Fluorine Radioisotopes / chemistry
  • Nuclear Magnetic Resonance, Biomolecular
  • Protein Interaction Domains and Motifs
  • Ubiquitin / chemistry
  • Ubiquitin / metabolism
  • Viscosity

Substances

  • Escherichia coli Proteins
  • Fluorine Radioisotopes
  • Ubiquitin