Selectivity and proofreading both contribute significantly to the fidelity of RNA polymerase III transcription

Proc Natl Acad Sci U S A. 2007 Jun 19;104(25):10400-5. doi: 10.1073/pnas.0704116104. Epub 2007 Jun 6.

Abstract

We examine here the mechanisms ensuring the fidelity of RNA synthesis by RNA polymerase III (Pol III). Misincorporation could only be observed by using variants of Pol III deficient in the intrinsic RNA cleavage activity. Determination of relative rates of the reactions producing correct and erroneous transcripts at a specific position on a tRNA gene, combined with computational methods, demonstrated that Pol III has a highly efficient proofreading activity increasing its transcriptional fidelity by a factor of 10(3) over the error rate determined solely by selectivity (1.8 x 10(-4)). We show that Pol III slows down synthesis past a misincorporation to achieve efficient proofreading. We discuss our findings in the context of transcriptional fidelity studies performed on RNA Pols, proposing that the fidelity of transcription is more crucial for Pol III than Pol II.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Computational Biology
  • Genetic Variation
  • Kinetics
  • Models, Biological
  • Protein Subunits / chemistry
  • Protein Subunits / isolation & purification
  • Protein Subunits / metabolism
  • RNA / biosynthesis*
  • RNA Polymerase III / chemistry*
  • RNA Polymerase III / genetics
  • RNA Polymerase III / isolation & purification
  • RNA Polymerase III / metabolism*
  • RNA, Transfer / genetics
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / metabolism
  • Saccharomyces cerevisiae / enzymology
  • Saccharomyces cerevisiae / genetics
  • Templates, Genetic
  • Transcription Factors / classification
  • Transcription Factors / isolation & purification
  • Transcription Factors / metabolism
  • Transcription, Genetic*

Substances

  • Protein Subunits
  • Recombinant Proteins
  • Transcription Factors
  • RNA
  • RNA, Transfer
  • RNA Polymerase III