A uniform response to mismatches in codon-anticodon complexes ensures ribosomal fidelity

Mol Cell. 2006 Feb 3;21(3):369-77. doi: 10.1016/j.molcel.2005.12.018.

Abstract

Ribosomes take an active part in aminoacyl-tRNA selection by distinguishing correct and incorrect codon-anticodon pairs. Correct codon-anticodon complexes are recognized by a network of ribosome contacts that are specific for each position of the codon-anticodon duplex and involve A-minor RNA interactions. Here, we show by kinetic analysis that single mismatches at any position of the codon-anticodon complex result in slower forward reactions and a uniformly 1000-fold faster dissociation of the tRNA from the ribosome. This suggests that high-fidelity tRNA selection is achieved by a conformational switch of the decoding site between accepting and rejecting modes, regardless of the thermodynamic stability of the respective codon-anticodon complexes or their docking partners at the decoding site. The forward reactions on mismatched codons were particularly sensitive to the disruption of the A-minor interactions with 16S rRNA and determined the variations in the misreading efficiency of near-cognate codons.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Anticodon*
  • Base Pair Mismatch*
  • Codon*
  • Enzyme Activation
  • Escherichia coli Proteins / genetics
  • Escherichia coli Proteins / metabolism
  • GTP Phosphohydrolases / metabolism
  • Macromolecular Substances
  • Nucleic Acid Conformation
  • Peptide Elongation Factor Tu / metabolism
  • Protein Biosynthesis*
  • RNA, Transfer, Amino Acid-Specific / metabolism
  • Ribosomes / metabolism*
  • Thermodynamics

Substances

  • Anticodon
  • Codon
  • Escherichia coli Proteins
  • Macromolecular Substances
  • RNA, Transfer, Amino Acid-Specific
  • GTP Phosphohydrolases
  • Peptide Elongation Factor Tu