Single-particle tracking of oriC-GFP fluorescent spots during chromosome segregation in Escherichia coli

J Struct Biol. 2005 Sep;151(3):275-87. doi: 10.1016/j.jsb.2005.06.004.

Abstract

DNA regions close to the origin of replication were visualized by the green fluorescent protein (GFP)-Lac repressor/lac operator system. The number of oriC-GFP fluorescent spots per cell and per nucleoid in batch-cultured cells corresponded to the theoretical DNA replication pattern. A similar pattern was observed in cells growing on microscope slides used for time-lapse experiments. The trajectories of 124 oriC-GFP spots were monitored by time-lapse microscopy of 31 cells at time intervals of 1, 2, and 3 min. Spot positions were determined along the short and long axis of cells. The lengthwise movement of spots was corrected for cell elongation. The step sizes of the spots showed a Gaussian distribution with a standard deviation of approximately 110 nm. Plots of the mean square displacement versus time indicated a free diffusion regime for spot movement along the long axis of the cell, with a diffusion coefficient of 4.3+/-2.6x10(-5) microm2/s. Spot movement along the short axis showed confinement in a region of the diameter of the nucleoid ( approximately 800 nm) with an effective diffusion coefficient of 2.9+/-1.7x10(-5) microm2/s. Confidence levels for the mean square displacement analysis were obtained from numerical simulations. We conclude from the analysis that within the experimental accuracy--the limits of which are indicated and discussed--there is no evidence that spot segregation requires any other mechanism than that of cell (length) growth.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Algorithms
  • Chromosome Segregation*
  • Chromosomes, Bacterial*
  • DNA Replication
  • DNA, Bacterial
  • Diffusion
  • Escherichia coli / genetics*
  • Escherichia coli / growth & development
  • Escherichia coli / physiology
  • Escherichia coli Proteins / genetics
  • Escherichia coli Proteins / metabolism
  • Fluorescent Dyes
  • Green Fluorescent Proteins / metabolism*
  • Indoles
  • Lac Operon
  • Microscopy, Video
  • Origin Recognition Complex*
  • Recombinant Fusion Proteins / metabolism
  • Time Factors

Substances

  • DNA, Bacterial
  • Escherichia coli Proteins
  • Fluorescent Dyes
  • Indoles
  • OriC chromosomal replication origin
  • Origin Recognition Complex
  • Recombinant Fusion Proteins
  • Green Fluorescent Proteins
  • DAPI