Mechanical studies of single ribosome/mRNA complexes

Biophys J. 2005 Sep;89(3):1909-19. doi: 10.1529/biophysj.104.056283. Epub 2005 Jun 10.

Abstract

Methodology was developed for specifically anchoring Escherichia coli 70S ribosomes onto a chemically modified, cysteine-reactive glass surface. Immobilized ribosomes maintain the capability of binding a polyuridylic acid (poly(U)) template, enabling investigation of mechanical properties of individual ribosome-poly(U) complexes using laser tweezers. Streptavidin-coated polystyrene microspheres bound specifically to the biotinylated 3' end of long (up to 10,000 bases) poly(U) strands. A novel optical method was built to control the position of the laser trap along the microscope optical axis at 2 nm resolution, facilitating measurement of the force-extension relationship for poly(U). Some immobilized ribosome-poly(U) complexes supported 100 pN of force applied at the 3' end of the mRNA. Binding of N-acetylated Phe-tRNA(Phe), an analog of the initiator fMet-tRNA(Met), enhanced the population of complexes that could withstand high forces. The persistence length of poly(U) RNA homopolymer, modeled as a worm-like chain, was found to be 0.79 +/- 0.05 nm and the backbone elasticity was 900 +/- 140 pN, similar to values for single-stranded DNA.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Biochemical Phenomena
  • Biochemistry
  • Biomechanical Phenomena
  • Biophysics / methods*
  • Biotinylation
  • Cysteine / chemistry
  • DNA / chemistry
  • DNA, Single-Stranded / chemistry
  • Escherichia coli / metabolism*
  • Fluorescence Resonance Energy Transfer
  • Lasers
  • Microspheres*
  • Models, Statistical
  • Peptide Chain Elongation, Translational
  • Poly U / chemistry
  • Polymers / chemistry
  • Polystyrenes / chemistry*
  • RNA / chemistry
  • RNA, Messenger / chemistry*
  • RNA, Messenger / metabolism
  • Ribosomes / chemistry*
  • Streptavidin / pharmacology*
  • Surface Properties
  • Temperature
  • Time Factors

Substances

  • DNA, Single-Stranded
  • Polymers
  • Polystyrenes
  • RNA, Messenger
  • Poly U
  • RNA
  • DNA
  • Streptavidin
  • Cysteine