Role of the RuvAB protein in avoiding spontaneous formation of deletion mutations in the Escherichia coli K-12 endogenous tonB gene

Biochem Biophys Res Commun. 2004 Oct 8;323(1):197-203. doi: 10.1016/j.bbrc.2004.08.078.

Abstract

The endogenous tonB gene of Escherichia coli was used as a target for spontaneous deletion mutations which were isolated from ruvAB-, recG-, and ruvC- cells. The rates of tonB mutation were essentially the same in ruv+, ruvAB-, recG-, and ruvC- cells. We analyzed tonB mutants by sequencing. In the ruv+, recG-, and ruvC- strains, the spectra were different from those obtained from the ruvAB- cells, where deletions dominated followed by IS insertions, base substitutions, and frameshifts, in that order. We then analyzed the tonB-trp large deletion, due to simultaneous mutations of the trp operon, and found that the frequency in ruvAB- was higher than those in ruv+, recG-, and ruvC- cells. To characterize deletion formation further, we analyzed all the tonB mutants from one colicin plate. Seven deletions were identified at five sites from the 45 tonB mutants of ruv+ cells and 24 deletions at 11 sites from the 43 tonB mutants of ruvAB- cells. Thus, the ruvAB- strain is a deletion mutator. We discuss the role of RuvAB in avoiding deletions.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alleles
  • Bacterial Proteins / genetics*
  • Bacterial Proteins / physiology*
  • Colicins / metabolism
  • DNA Helicases / genetics
  • DNA Helicases / physiology*
  • DNA-Binding Proteins / genetics
  • DNA-Binding Proteins / physiology*
  • Endodeoxyribonucleases / genetics
  • Escherichia coli / genetics
  • Escherichia coli / metabolism*
  • Escherichia coli Proteins / genetics
  • Gene Deletion
  • Membrane Proteins / genetics*
  • Models, Genetic
  • Mutagenesis
  • Mutation*
  • Plasmids / metabolism

Substances

  • Bacterial Proteins
  • Colicins
  • DNA-Binding Proteins
  • Escherichia coli Proteins
  • Membrane Proteins
  • RuvB protein, Bacteria
  • ruvC protein, E coli
  • tonB protein, Bacteria
  • RecG protein, E coli
  • Endodeoxyribonucleases
  • Holliday junction DNA helicase, E coli
  • DNA Helicases