Summary of organisms and metabolic pathways used to build a FBA model

Range Table - link
Organism prokaryote
Reference Boyle NR, Morgan JA. Computation of metabolic fluxes and efficiencies for biological carbon dioxide fixation. Metab Eng. 2011 Jan 26. doi:10.1016/j.ymben.2011.01.005 Accepted manuscript p.29 table 1PubMed ID21276868
Primary Source Shastri AA, Morgan JA. Flux balance analysis of photoautotrophic metabolism. Biotechnol Prog. 2005 Nov-Dec21(6):1617-26. AND Cork DJ, Garunas R, Sajjad A. Chlorobium limicola forma thiosulfatophilum: Biocatalyst in the Production of Sulfur and Organic Carbon from a Gas Stream Containing H(2)S and CO(2). Appl Environ Microbiol. 1983 Mar45(3):913-8. p.916 right column 1st paragraph AND Herter S. et al., Autotrophic CO(2) fixation by Chloroflexus aurantiacus: study of glyoxylate formation and assimilation via the 3-hydroxypropionate cycle. J Bacteriol. 2001 Jul183(14):4305-16. p.4313 right column bottom paragraph AND Berg IA, Kockelkorn D, Buckel W, Fuchs G. A 3-hydroxypropionate/4-hydroxybutyrate autotrophic carbon dioxide assimilation pathway in Archaea. Science. 2007 Dec 14 318(5857):1782-6 AND Jahn U, Huber H, Eisenreich W, Hügler M, Fuchs G. Insights into the autotrophic CO2 fixation pathway of the archaeon Ignicoccus hospitalis: comprehensive analysis of the central carbon metabolism. J Bacteriol. 2007 Jun189(11):4108-19 p.4110 right column top paragraphPubMed ID16321043, 16346255, 11418572, 18079405, 17400748
Entered by Uri M
ID 106062