Results
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| Property | Organism | Value | Units | ID | Details |
|---|---|---|---|---|---|
| Diffusion coefficient of hOgg1 DNA binding protein on elongated DNA | Human Homo sapiens | 5.78х10^5 Table - link | nm^2/sec | 107461 | DeSantis MC, Li JL, Wang... |
| E. coli DNA-binding transcription factor protein abundances | Bacteria Escherichia coli | Table - link | N/A | 102632 | Robison K, McGuire AM... |
| Residence time of nonspecific binding of protein on DNA | Bacteria Escherichia coli | <=5 | msec | 102037 | X. Sunney Xie, Paul J. Choi... |
| Average distance between DNA-binding proteins on chromosome | Bacteria Escherichia coli | ∼36 | bp | 110445 | Li GW, Burkhardt D, Gross C... |
| Single-stranded DNA binding proteins per cell | Bacteria Escherichia coli | 1000-7000 | Copies/cell | 102027 | X. Sunney Xie, Paul J. Choi... |
| Decrease in binding energy of Ets1 protein to DNA in each phosphorylation event | Unspecified | ~0.4 | kcal/mol | 105725 | Serber Z, Ferrell JE... |
| Three dimensional diffusion constant of fusion protein with DNA binding domain removed | Bacteria Escherichia coli | 3 | µm^2/sec | 102039 | X. Sunney Xie, Paul J. Choi... |
| Diffusion properties of DNA binding proteins on elongated DNA | Generic | Table - link | N/A | 107460 | DeSantis MC, Li JL, Wang... |
| Estimated number of DNA-binding proteins | Bacteria Escherichia coli | ~240 - 260 | proteins | 113767 | Ishihama A, Functional... |
| Difference in binding energy between distinct patches of contact between DNA and histones | Eukaryotes | 0.5 | kcal/mol | 103142 | Garcia HG, Grayson P... |
| Distance between dinucleotide motifs conferring DNA high affinity binding to nucleosome | Generic | 10 | bp | 103151 | Garcia HG, Grayson P... |
| Characteristic length of a sequence that a particular DNA binding motif can recognize | Bacteria Escherichia coli | <=5 | base pairs | 102072 | Benno Muller-hill, 1996... |
| Structural and Function Properties of Transcription-Factor DNA-Binding Domains | Various | Table - link | N/A | 104597 | Nalefski EA, Nebelitsky E... |
| Number of proteins with DNA-binding domains | Bacteria Escherichia coli | 267 (Table - link) | Proteins | 109203 | Babu MM, Luscombe NM... |
| Number of proteins with DNA-binding domains | Budding yeast Saccharomyces cerevisiae | 245 (Table - link) | Proteins | 109204 | Babu MM, Luscombe NM... |
| Number of proteins with DNA-binding domains | Nematode Caenorhabditis elegans | 1463 (Table - link) | Proteins | 109205 | Babu MM, Luscombe NM... |
| Number of proteins with DNA-binding domains | Human Homo sapiens | 2604 (Table - link) | Proteins | 109206 | Babu MM, Luscombe NM... |
| Number of proteins with DNA-binding domains | Thale cress Arabidopsis thaliana | 1667 (Table - link) | Proteins | 109207 | Babu MM, Luscombe NM... |
| Dissociation constant for nonspecific RNAP-DNA binding | Bacteria Escherichia coli | 3100 | μM | 110064 | Klumpp S, Hwa T. Gro... |
| Maximum distance traveled by protein in search of binding site on DNA (1 dimensional movement) without dissociation | Unspecified | 30 | nucleotides | 105291 | Gowers DM, Wilson GG... |