Number of flat super helices of chromatin around nucleosome core particle
|
Eukaryotes |
7/4 |
Turns |
102986 |
Widom J. Structure, dynamics... |
Number of water molecules mediating interactions between histone and DNA throughout nucleosome core particle
|
Eukaryotes |
121 |
molecules |
103085 |
Davey CA, Sargent DF... |
Number of distinct patches of contact between DNA and histone octamer in nucleosome
|
Eukaryotes |
14 |
Unitless |
103141 |
Garcia HG, Grayson P... |
Apparent pause densities and mean pause durations on bare DNA and nucleosomal DNA in the extended NPS [nucleosome positioning sequence] region
|
Yeast |
Table - link |
N/A |
111869 |
Dangkulwanich et al.... |
Length of linker DNA between adjacent nucleosomes
|
Eukaryotes |
5 - 60bp: mean ≈33bp |
bp |
112154 |
Michael Lynch and Georgi... |
Difference in binding energy between distinct patches of contact between DNA and histones
|
Eukaryotes |
0.5 |
kcal/mol |
103142 |
Garcia HG, Grayson P... |
Energy content in distinct patches of contact between DNA and histones
|
Eukaryotes |
3.6 |
kcal/mol |
103143 |
Garcia HG, Grayson P... |
Properties of two discrete classes of chromatin fiber structure
|
Eukaryotes |
[1] diameter 33nm: ≈11 nucleosomes per 11 nm [2] diameter ≈44nm: ≈15 nucleosomes per 11 nm |
N/A |
111136 |
Robinson PJ, Fairall L... |
Range of affinities of DNA sequences for wrapping into nucleosomes
|
Generic |
>=5000 |
Fold |
103150 |
Garcia HG, Grayson P... |
Length of DNA loops making chromosome territories (CT)
|
Eukaryotes |
50 to 200 |
kbp |
106156 |
Cremer T, Cremer M, Dietzel S... |
Angle of kinks formed by packed viral DNA
|
Various |
180 |
Degrees |
103130 |
Garcia HG, Grayson P... |
Distance between repeating DNA dinucleotides
|
Influenza |
11 |
bp |
103152 |
Garcia HG, Grayson P... |
Compaction of chromatin in preparation to cell division
|
Unspecified |
10000 |
Fold |
102984 |
Widom J. Structure, dynamics... |
Estimated costs (in ATP) for the five histone proteins in select eukaryotic species
|
Eukaryotes |
Table - link |
~P (ATP) |
112158 |
Michael Lynch and Georgi... |
Fraction of DNA bound to nucleosomes
|
Eukaryotes |
75-90 |
% |
103111 |
Garcia HG, Grayson P... |
Average length of Okazaki fragment
|
Budding yeast Saccharomyces cerevisiae |
~165 |
bp |
112149 |
Michael Lynch and Georgi... |
Number of atoms and shell volumes for several macromolecules
|
Various |
Table - link |
N/A |
102513 |
Neil R. Voss. 2006 'Geometric... |
Energy required of chromatin-remodellers to break each DNA-histone contact
|
Eukaryotes |
7.3 |
kcal/mole free energy |
105962 |
Saha A, Wittmeyer J,... |
Energy stored in each DNA-histone contact
|
Eukaryotes |
1 |
kcal/mole |
105961 |
Saha A, Wittmeyer J,... |
Compaction of DNA as result of superhelix wrap around nucleosomes
|
Eukaryotes |
5-10 |
Fold |
103086 |
Felsenfeld G, Groudine... |