Results
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| Property | Organism | Value | Units | ID | Details |
|---|---|---|---|---|---|
| Volume of protein + DNA | Bacteriophage T7 | 1.14e-4 (±0.000005) | µm^3 | 100232 | Stroud et al. Assembly... |
| Residence time of SYTOX Orange dye (binding time to DNA) | Unspecified | ~1 | sec | 112340 | Van Valen D et al., A... |
| Concentration of DNA binding sites inside the cell | Bacteria Escherichia coli | 0.01 | M | 100611 | G Kolesov, Z Wunderlich... |
| Number of contiguous sites (nucleotides) rendered inaccessible to further binding by the binding of lac repressor | Unspecified | ~24 (or ~12 base pairs) | nucleotides | 112619 | Record MT Jr et al.,... |
| Reduction in membrane binding of myristoylated protein by each phosphorylation event | Generic | 10 | fold | 105721 | McLaughlin S, Aderem... |
| Numbers of DNA-binding transcription factors in five organisms | Various | Table - link | N/A | 109202 | Babu MM, Luscombe NM... |
| Equilibrium and Kinetic Constants for the Binding of the Egr-1 ZFD to Synthetic DNA Duplex | Human Homo sapiens | Table - link | N/A | 104605 | Nalefski EA, Nebelitsky E... |
| Molecular mass of subunit of mannose-binding protein (collectin) | Human Homo sapiens | 32 | kDa | 104345 | Sheriff S, Chang CY,... |
| Apparent diffusion constant of protein along DNA segments | Bacteria Escherichia coli | 0.4 (±0.02) | µm^2/sec | 102038 | Elf J, Li G, Xie XS.... |
| First rate dissociation constant for the binding of the Egr-1 ZFD to Synthetic DNA Duplex | Human Homo sapiens | 1.11e-3 (Table - link) | Sec^-1 | 104606 | Nalefski EA, Nebelitsky E... |
| DNA replication rate of DNA polymerase II (slow-dna repair) | Bacteria Escherichia coli | 20-30 | nucleotides/sec | 104125 | Bonner CA, Stukenberg PT... |
| Nuclear (DNA+protein) volume | Bacteria Escherichia coli | 0.16 | µm^3 | 100013 | http://ccdb.wishartl... |
| Kinetic parameters used in transcription factor DNA binding model | Unspecified | Table - link | N/A | 106521 | Sanchez A, Garcia HG... |
| Constant for non specific binding of RNAP to DNA | Bacteria Escherichia coli | 10 | µM | 103589 | Bintu L, Buchler NE,... |
| Hill coefficient for binding ATP to ATPase DNA packaging motor | Bacteriophage phi 29 | 1.2 (±0.2) | unitless | 103171 | Chemla YR, Aathavan K... |
| In vitro residence time for glucocorticoid receptor (GR) in increased DNA conc. (22µg/ml) | Rat Rattus norvegicus | 20 | Sec | 106486 | Lieberman BA, Nordeen... |
| Probability of ribosome binding to mRNA | Bacteria Escherichia coli | 0.8 | unitless | 102043 | X. Sunney Xie, Paul J. Choi... |
| DNA repair protein Ku80 diffusion coefficient | Human Homo sapiens | 0.35-14.7 Table - link | µm^2/sec | 110963 | Bendtsen KM et al., Dynamics... |
| Diffusion coefficient of p53 on elongated DNA | Human Homo sapiens | 3.01х10^5 Table - link | nm^2/sec | 107462 | DeSantis MC, Li JL, Wang... |
| Percent of the total protein in the osmotic shock fluid that consists of maltose-binding protein after induction with maltose | Bacteria Escherichia coli | 30 to 40 Table - link | % | 109792 | Dietzel I, Kolb V, Boos... |