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Property Organism Value Units ID Details
Biophysical and physiological parameters used in simulations (squid axon and mammalian pyramidal cell) Metazoa animals Table - link N/A 109242 Faisal AA, White JA,...
Basic biophysical parameters of stomatal guard cells in the open and closed state in Vicia faba and Arabidopsis Plants Table - link N/A 114023 Jezek M, Blatt MR. The...
Diffusion rate of animal cell Generic 0.05 (Table - link) µm^2/sec 100299 "Cell movements - from...
Diffusion rate of small molecule Generic 500 (Table - link) µm^2/sec 100285 "Cell movements - from...
Diffusion rate of virus particle Generic 5 (Table - link) µm^2/sec 100291 "Cell movements - from...
Diffusion rate of bacterial cell Generic 0.5 (Table - link) µm^2/sec 100295 "Cell movements - from...
Characteristic diffusion rate of protein molecule (in water) Generic 50 (Table - link) µm^2/sec 100288 "Cell movements - from...
Diffusion rate of Subtilisin novo Bacteria Bacillus amyloliquefaciens 90.4 (Table - link) µm^2/sec 100388 Squire PG, Himmel ME....
Diffusion rate of Bence Jones REI Human Homo sapiens 100 (Table - link) µm^2/sec 100384 Squire PG, Himmel ME....
Transcription related parameters for 2 doub/h, 37°C Bacteria Escherichia coli Table - link N/A 109082 Tadmor AD, Tlusty T....
Cell state and additional parameters (in gray) for various growth conditions Bacteria Escherichia coli Table - link N/A 109079 Tadmor AD, Tlusty T....
Genetic parameters for E. coli growing at 2 doub/h, 37°C Bacteria Escherichia coli Table - link N/A 109083 Tadmor AD, Tlusty T....
Genetic parameters for E. coli growing at 1 and 2.5 doub/h, 37°C Bacteria Escherichia coli Table - link N/A 109080 Tadmor AD, Tlusty T....
Parameters used for the viral elemental composition calculation Virus Table - link N/A 112430 Jover LF, Effler TC, Buchan A...
Growth parameters Bacteria Escherichia coli Excel Table - link N/A 109344 Valgepea K, Adamberg K...
Swimming parameters Bacteria Thiovulum majus 3–10 rotations/sec at a radius of 5–40μm: a pitch of 40-250μm N/A 110075 Schulz HN, Jorgensen...
Photophysiological Parameters Cyanobacteria Table - link N/A 111685 Zorz JK et al., The RUBISCO...
Diffusion coefficients of molecules, virus and cells in water Various Table - link N/A 105174 "Cell movements - from...
Diameters of axon above which spontaneous action potentials begin to appear derived by stochastic simulations Eukaryotes mammalian pyramidal cell axon 0.15: squid axon 0.3 μm 109235 Faisal AA, White JA,...
Biofilm model parameters Bacteria Escherichia coli Table - link N/A 104436 Kreft JU, Picioreanu C...