Transcriptome profiling reveals the importance of plasmid pSymB for osmoadaptation of Sinorhizobium meliloti

J Bacteriol. 2006 Nov;188(21):7617-25. doi: 10.1128/JB.00719-06. Epub 2006 Aug 17.

Abstract

In this work, DNA microarrays were used to investigate genome-wide transcriptional responses of Sinorhizobium meliloti to a sudden increase in external osmolarity elicited by addition of either NaCl or sucrose to exponentially growing cultures. A time course of the response within the first 4 h after the osmotic shock was established. We found that there was a general redundancy in the differentially expressed genes after NaCl or sucrose addition. Both kinds of stress resulted in induction of a large number of genes having unknown functions and in repression of many genes coding for proteins with known functions. There was a strong replicon bias in the pattern of the osmotic stress response; whereas 64% of the upregulated genes had a plasmid localization, 85% of the downregulated genes were chromosomal. Among the pSymB osmoresponsive genes, 83% were upregulated, suggesting the importance of this plasmid for S. meliloti osmoadaptation. Indeed, we identified a 200-kb region in pSymB needed for adaptation to saline shock which has a high density of osmoregulated genes.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adaptation, Physiological*
  • Chromosomes, Bacterial / genetics
  • Gene Expression Profiling*
  • Gene Expression Regulation, Bacterial*
  • Hypertonic Solutions
  • Oligonucleotide Array Sequence Analysis
  • Osmotic Pressure*
  • Plasmids / genetics*
  • RNA, Bacterial / analysis
  • RNA, Bacterial / genetics
  • RNA, Messenger / analysis
  • RNA, Messenger / genetics
  • Sinorhizobium meliloti / genetics
  • Sinorhizobium meliloti / growth & development
  • Sinorhizobium meliloti / physiology*
  • Sodium Chloride
  • Sucrose

Substances

  • Hypertonic Solutions
  • RNA, Bacterial
  • RNA, Messenger
  • Sodium Chloride
  • Sucrose