Mass spectrometry of hydrogen/deuterium exchange in 70S ribosomal proteins from E. coli

FEBS Lett. 2006 Jun 26;580(15):3638-42. doi: 10.1016/j.febslet.2006.05.049. Epub 2006 Jun 2.

Abstract

The 70S ribosome from Escherichia coli is a supermacro complex (MW: 2.7MDa) comprising three RNA molecules and more than 50 proteins. We have for the first time successfully analyzed the flexibility of 70S ribosomal proteins in solution by detecting the hydrogen/deuterium exchange with mass spectrometry. Based on the deuterium incorporation map of the X-ray structure obtained at the time of each exchange, we demonstrate the structure-flexibility-function relationship of ribosome focusing on the deuterium incorporation of the proteins binding ligands (tRNA, mRNA, and elongation factor) and the relation with structural assembly processes.

MeSH terms

  • Deuterium Exchange Measurement
  • Escherichia coli / chemistry*
  • Models, Molecular
  • Ribosomal Proteins / chemistry*
  • Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization

Substances

  • Ribosomal Proteins